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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F897_03346HTH araC/xylS-type domain-containing protein. (335 aa)    
Predicted Functional Partners:
F897_03345
Hydrolase_4 domain-containing protein.
 
     0.646
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.533
F897_00020
Uncharacterized protein.
  
     0.528
F897_01578
HTH araC/xylS-type domain-containing protein.
  
     0.515
F897_03344
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.508
F897_03347
Uncharacterized protein.
       0.487
F897_03348
Integrase catalytic domain-containing protein.
       0.487
F897_03349
Integrase catalytic domain-containing protein.
       0.487
F897_02311
Uncharacterized protein.
  
     0.481
F897_01269
Uncharacterized protein.
  
     0.460
Your Current Organism:
Acinetobacter variabilis
NCBI taxonomy Id: 70346
Other names: A. variabilis, Acinetobacter genomosp. 15, Acinetobacter genomospecies 15, Acinetobacter sp. 15, Acinetobacter sp. NIPH 2171, Acinetobacter variabilis Krizova et al. 2015, CCM 8555, CCUG 26390, CIP 110486, strain NIPH 2171
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.