Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
F897_03365HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
F897_03362
Methionine synthase.
 
   
 0.664
F897_03321
HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family.
  
     0.547
F897_02076
HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family.
  
     0.520
F897_03364
Probable membrane transporter protein.
       0.516
F897_02762
Uncharacterized protein.
  
     0.497
F897_02096
HTH lysR-type domain-containing protein; Belongs to the LysR transcriptional regulatory family.
  
     0.464
F897_03361
Uncharacterized protein.
 
     0.456
F897_03363
Flavin_Reduct domain-containing protein.
       0.431
F897_01398
Uncharacterized protein.
  
     0.420
lptA
Lipopolysaccharide export system protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
  
     0.402
Your Current Organism:
Acinetobacter variabilis
NCBI taxonomy Id: 70346
Other names: A. variabilis, Acinetobacter genomosp. 15, Acinetobacter genomospecies 15, Acinetobacter sp. 15, Acinetobacter sp. NIPH 2171, Acinetobacter variabilis Krizova et al. 2015, CCM 8555, CCUG 26390, CIP 110486, strain NIPH 2171
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