A0A090M708 protein (Ostreococcus tauri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A090M708

P-loop containing nucleoside triphosphate hydrolase. (627 aa)

Predicted Functional Partners:

Q01F60_OSTTA

0.798

Q01FJ1_OSTTA

0.776

A0A090M4D9

0.724

A0A090MCX8

0.714

A0A096P7B8

0.709

A0A090M5Q6

0.704

Q00T39_OSTTA

0.703

Q01F89_OSTTA

0.698

A0A090M271

0.695

A0A090M6D0

0.686

Your Current Organism:

Ostreococcus tauri

NCBI taxonomy Id: 70448
Other names: O. tauri

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A090M271	A0A090M4D9	A0A090M271	A0A090M4D9	Ribosome maturation protein SBDS, N-terminal.	G-protein beta WD-40 repeat.	0.760
A0A090M271	A0A090M5Q6	A0A090M271	A0A090M5Q6	Ribosome maturation protein SBDS, N-terminal.	Nucleotide-binding, alpha-beta plait.	0.575
A0A090M271	A0A090M708	A0A090M271	A0A090M708	Ribosome maturation protein SBDS, N-terminal.	P-loop containing nucleoside triphosphate hydrolase.	0.695
A0A090M271	A0A090MCX8	A0A090M271	A0A090MCX8	Ribosome maturation protein SBDS, N-terminal.	Eukaryotic rRNA processing.	0.542
A0A090M271	A0A096P7B8	A0A090M271	A0A096P7B8	Ribosome maturation protein SBDS, N-terminal.	Ribosomal protein L30, ferredoxin-like fold domain.	0.991
A0A090M271	Q00T39_OSTTA	A0A090M271	Q00T39	Ribosome maturation protein SBDS, N-terminal.	Ribosomal protein S8e/ribosomal biogenesis NSA2.	0.960
A0A090M271	Q01F60_OSTTA	A0A090M271	Q01F60	Ribosome maturation protein SBDS, N-terminal.	BOP1, N-terminal domain.	0.726
A0A090M271	Q01F89_OSTTA	A0A090M271	Q01F89	Ribosome maturation protein SBDS, N-terminal.	Ribosomal protein L24e, conserved site.	0.940
A0A090M271	Q01FJ1_OSTTA	A0A090M271	Q01FJ1	Ribosome maturation protein SBDS, N-terminal.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.560
A0A090M4D9	A0A090M271	A0A090M4D9	A0A090M271	G-protein beta WD-40 repeat.	Ribosome maturation protein SBDS, N-terminal.	0.760
A0A090M4D9	A0A090M5Q6	A0A090M4D9	A0A090M5Q6	G-protein beta WD-40 repeat.	Nucleotide-binding, alpha-beta plait.	0.993
A0A090M4D9	A0A090M708	A0A090M4D9	A0A090M708	G-protein beta WD-40 repeat.	P-loop containing nucleoside triphosphate hydrolase.	0.724
A0A090M4D9	A0A090MCX8	A0A090M4D9	A0A090MCX8	G-protein beta WD-40 repeat.	Eukaryotic rRNA processing.	0.991
A0A090M4D9	A0A096P7B8	A0A090M4D9	A0A096P7B8	G-protein beta WD-40 repeat.	Ribosomal protein L30, ferredoxin-like fold domain.	0.980
A0A090M4D9	Q00T39_OSTTA	A0A090M4D9	Q00T39	G-protein beta WD-40 repeat.	Ribosomal protein S8e/ribosomal biogenesis NSA2.	0.976
A0A090M4D9	Q01F60_OSTTA	A0A090M4D9	Q01F60	G-protein beta WD-40 repeat.	BOP1, N-terminal domain.	0.999
A0A090M4D9	Q01F89_OSTTA	A0A090M4D9	Q01F89	G-protein beta WD-40 repeat.	Ribosomal protein L24e, conserved site.	0.976
A0A090M4D9	Q01FJ1_OSTTA	A0A090M4D9	Q01FJ1	G-protein beta WD-40 repeat.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.999
A0A090M5Q6	A0A090M271	A0A090M5Q6	A0A090M271	Nucleotide-binding, alpha-beta plait.	Ribosome maturation protein SBDS, N-terminal.	0.575
A0A090M5Q6	A0A090M4D9	A0A090M5Q6	A0A090M4D9	Nucleotide-binding, alpha-beta plait.	G-protein beta WD-40 repeat.	0.993