STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A090M742ATPase, AAA-type, CDC48; Belongs to the AAA ATPase family. (584 aa)    
Predicted Functional Partners:
A0A096PA95
Peroxisome biogenesis factor 1, N-terminal.
  
0.999
A0A090N3E8
Tetratricopeptide repeat.
   
 0.914
A0A096PAL2
Zinc finger, RING/FYVE/PHD-type.
   
 0.858
A0A096P9H8
Peroxisome assembly protein 12.
   
 0.846
Q01FR3_OSTTA
Peroxisomal membrane protein 14.
    
 0.830
A0A090M653
Uncharacterized protein.
    
 0.822
A0A090M5G9
G-protein beta WD-40 repeat.
     
 0.820
Q012Q1_OSTTA
Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.
   
 0.673
Q015J7_OSTTA
Fis1, C-terminal tetratricopeptide repeat.
     
 0.660
A0A090M8H3
P-loop containing nucleoside triphosphate hydrolase.
   
 
 0.612
Your Current Organism:
Ostreococcus tauri
NCBI taxonomy Id: 70448
Other names: O. tauri
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.