Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A090M754Cold-shock protein, DNA-binding. (107 aa)    
Predicted Functional Partners:
Q017E1_OSTTA
Helicase, C-terminal.
   
 0.600
A0A090M8F9
Ubiquitin supergroup.
   
  0.510
A0A090M4S1
Ribonucleoprotein LSM domain,eukaryotic/archaea-type.
   
  0.502
A0A090LZF4
Vacuolar protein sorting-associated protein 13A N-terminal domain.
   
 
 0.474
A0A096PAL5
Vacuolar protein sorting-associated protein 13A N-terminal domain.
   
 
 0.474
A0A090M1E8
Nucleotide-binding, alpha-beta plait.
  
  0.467
A0A096P7C9
Small nuclear ribonucleoprotein G.
   
  0.467
A0A096P958
Like-Sm (LSM) domain.
    
 
 0.453
A0A090M2Y5
Ubiquitin supergroup.
   
  0.439
A0A096PBP8
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.432
Your Current Organism:
Ostreococcus tauri
NCBI taxonomy Id: 70448
Other names: O. tauri
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