A0A096P9D4 protein (Ostreococcus tauri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A096P9D4

Bestrophin/UPF0187. (364 aa)

Predicted Functional Partners:

Q00YC4_OSTTA

0.443

Q019Z7_OSTTA

0.443

A0A096P7K8

0.426

A0A090M4Y9

0.415

A0A090M9E6

0.415

A0A090M9K1

0.415

Q01F02_OSTTA

0.415

A0A090M528

0.414

Q01EI8_OSTTA

0.406

A0A090N4N0

0.405

Your Current Organism:

Ostreococcus tauri

NCBI taxonomy Id: 70448
Other names: O. tauri

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A090M4Y9	A0A090M528	A0A090M4Y9	A0A090M528	DNA-directed RNA polymerase RPB5 subunit,eukaryote/virus.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A090M4Y9	A0A090M9E6	A0A090M4Y9	A0A090M9E6	DNA-directed RNA polymerase RPB5 subunit,eukaryote/virus.	RNA polymerase, Rpb8.	0.999
A0A090M4Y9	A0A090M9K1	A0A090M4Y9	A0A090M9K1	DNA-directed RNA polymerase RPB5 subunit,eukaryote/virus.	RNA polymerase Rpb7, N-terminal.	0.999
A0A090M4Y9	A0A090N4N0	A0A090M4Y9	A0A090N4N0	DNA-directed RNA polymerase RPB5 subunit,eukaryote/virus.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
A0A090M4Y9	A0A096P9D4	A0A090M4Y9	A0A096P9D4	DNA-directed RNA polymerase RPB5 subunit,eukaryote/virus.	Bestrophin/UPF0187.	0.415
A0A090M4Y9	Q00YC4_OSTTA	A0A090M4Y9	Q00YC4	DNA-directed RNA polymerase RPB5 subunit,eukaryote/virus.	Hydroxy monocarboxylic acid anion dehydrogenase,HIBADH-type.	0.685
A0A090M4Y9	Q019Z7_OSTTA	A0A090M4Y9	Q019Z7	DNA-directed RNA polymerase RPB5 subunit,eukaryote/virus.	Hydroxy monocarboxylic acid anion dehydrogenase,HIBADH-type.	0.685
A0A090M4Y9	Q01EI8_OSTTA	A0A090M4Y9	Q01EI8	DNA-directed RNA polymerase RPB5 subunit,eukaryote/virus.	RNA polymerase archaeal subunit P/eukaryotic subunit RPC10.	0.999
A0A090M4Y9	Q01F02_OSTTA	A0A090M4Y9	Q01F02	DNA-directed RNA polymerase RPB5 subunit,eukaryote/virus.	DNA-directed RNA polymerase, 30-40kDa subunit,conserved site.	0.999
A0A090M528	A0A090M4Y9	A0A090M528	A0A090M4Y9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase RPB5 subunit,eukaryote/virus.	0.999
A0A090M528	A0A090M9E6	A0A090M528	A0A090M9E6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase, Rpb8.	0.999
A0A090M528	A0A090M9K1	A0A090M528	A0A090M9K1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase Rpb7, N-terminal.	0.999
A0A090M528	A0A090N4N0	A0A090M528	A0A090N4N0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
A0A090M528	A0A096P7K8	A0A090M528	A0A096P7K8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Concanavalin A-like lectin/glucanase, subgroup.	0.495
A0A090M528	A0A096P9D4	A0A090M528	A0A096P9D4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Bestrophin/UPF0187.	0.414
A0A090M528	Q00YC4_OSTTA	A0A090M528	Q00YC4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Hydroxy monocarboxylic acid anion dehydrogenase,HIBADH-type.	0.583
A0A090M528	Q019Z7_OSTTA	A0A090M528	Q019Z7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Hydroxy monocarboxylic acid anion dehydrogenase,HIBADH-type.	0.583
A0A090M528	Q01EI8_OSTTA	A0A090M528	Q01EI8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase archaeal subunit P/eukaryotic subunit RPC10.	0.999
A0A090M528	Q01F02_OSTTA	A0A090M528	Q01F02	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase, 30-40kDa subunit,conserved site.	0.999
A0A090M9E6	A0A090M4Y9	A0A090M9E6	A0A090M4Y9	RNA polymerase, Rpb8.	DNA-directed RNA polymerase RPB5 subunit,eukaryote/virus.	0.999