STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OgdProlyl 3,4-dihydroxylase OGFOD1; Prolyl 3,4-dihydroxylase that catalyzes 3,4-dihydroxylation of 'Pro-61' of small ribosomal subunit uS12 (RPS23), thereby regulating protein translation termination efficiency. Belongs to the TPA1 family. (514 aa)    
Predicted Functional Partners:
A0A090M6K3
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
    0.631
A0A090M2J4
ABC transporter, conserved site.
   
   0.573
A0A096P9L1
ABC transporter, conserved site.
   
   0.573
A0A096PAS9
ABC transporter, conserved site.
   
   0.573
A0A090M4A9
Translation elongation/initiation factor/Ribosomal, beta-barrel.
   
 
 0.440
A0A090M732
Ribosome biogenesis protein BMS1/TSR1,C-terminal.
   
    0.412
Q017E9_OSTTA
Nucleic acid-binding, OB-fold; Belongs to the universal ribosomal protein uS12 family.
    
 
 0.401
A0A090M1A6
Peptide Chain Release Factor eRF1/aRF1,N-terminal.
   
 
 0.400
Your Current Organism:
Ostreococcus tauri
NCBI taxonomy Id: 70448
Other names: O. tauri
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