STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH0006274aa long hypothetical protein; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo. (274 aa)    
Predicted Functional Partners:
PH1539
121aa long hypothetical protein; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.
  
   
 0.737
PH0002
155aa long hypothetical transcription termination-antitermination factor; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.
 
     0.676
PH0003
372aa long hypothetical cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
      0.670
PH0660
212aa long hypothetical protein; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN); Belongs to the archaeal riboflavin kinase family.
  
     0.596
PH0989
102aa long hypothetical protein.
  
     0.589
PHS032
97aa long hypothetical 50S ribosomal protein L21; Similar to Swiss_Prot:P54013 percent identity: 67.368 in 95aa; Swiss_Prot:P12734 percent identity: 51.163 in 86aa; GENPEPT:F20014 percent identity: 37.500 in 72aa; Belongs to the eukaryotic ribosomal protein eL21 family.
 
     0.582
PH0355
109aa long hypothetical protein.
  
     0.574
PH0231
303aa long hypothetical protein.
 
     0.557
PH0007
232aa long hypothetical protein; Similar to owl:SS56KBFR35 percent identity: 37.778 in 186aa.
       0.554
PH1903
368aa long hypothetical protein; Similar to PIR:G64428 percent identity: 42.941 in 175aa.
  
     0.538
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.