STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH1423454aa long hypothetical 4-aminobutyrate aminotransferase; Similar to owl:D5045389 percent identity: 38.539 in 406aa; Swiss_Prot:P30268 percent identity: 39.552 in 409aa; Swiss_Prot:P40829 percent identity: 39.646 in 409aa. motif=aminotransferases class-III pyridoxal-phosphate attachment site; ATP/GTP-binding s; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (454 aa)    
Predicted Functional Partners:
PH0937
383aa long hypothetical protein; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine, and the decarboxylation of L-glutamate to produce 4- aminobutanoate. Can also use cysteate and cysteine sulfite, but not L- tyrosine. Specific activities toward L-aspartate and cysteate are higher than toward L-glutamate.
 
 0.941
PH1470
280aa long hypothetical protein; Similar to PIR:B64326 percent identity: 58.468 in 256aa.
     
  0.900
PH1020
438aa long hypothetical aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp).
     
 0.654
PH0781
526aa long hypothetical alanine transport protein; Similar to Swiss_Prot:P44917 percent identity: 42.202 in 517aa; owl:HPAE0006036 percent identity: 43.736 in 524aa; Swiss_Prot:P44555 percent identity: 38.095 in 311aa. motif=sodium:alanine symporter family signature.
     
 0.652
PH1425
194aa long hypothetical protein.
       0.572
PH1308
386aa long hypothetical serine aminotransferase; Similar to PIR:G64419 percent identity: 34.637 in 362aa; PIR:JC2256 percent identity: 33.803 in 360aa; owl:S75916 percent identity: 34.551 in 364aa.
  
 
 0.462
PH0642
262aa long hypothetical protein; Similar to owl:PBU4258077 percent identity:40.397 in 157aa; owl:HPAE0005494 percent identity:38.136 in 257aa; Swiss_Prot:P55176 percent identity:32.540 in 265aa. motif=ATP/GTP-binding site motif A (P-loop).
  
  
 0.413
PH0726
317aa long hypothetical ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
  
 0.400
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.