STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH1808380aa long hypothetical protein; Similar to PIR:C64445 percent identity: 37.143 in 285aa. (380 aa)    
Predicted Functional Partners:
PH1888
329aa long hypothetical protein; Similar to PIR:F64368 percent identity: 36.207 in 298aa.
  
     0.642
PH0261
206aa long hypothetical protein; Similar to PIR:E64422 percent identity:36.145 in 174aa.
  
     0.625
PH0343
170aa long hypothetical protein; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
  
     0.619
PH0990
389aa long hypothetical protein; Similar to PIR:H64505 percent identity: 34.831 in 383aa.
  
   
 0.612
PH1477
142aa long hypothetical protein; Similar to PIR:A64503 percent identity: 45.082 in 124aa; Belongs to the UPF0179 family.
  
     0.600
PH1163
148aa long hypothetical protein; Similar to PIR:H64370 percent identity:36.752 in 118aa; Swiss_Prot:P54512 percent identity:34.959 in 124aa.
      
 0.597
PH0135
570aa long hypothetical protein; Similar to PIR:E64427 percent identity:29.295 in 479aa.
  
     0.594
PH1401
203aa long hypothetical protein; Specifically catalyzes the N1-methylation of pseudouridine at position 54 (Psi54) in tRNAs; Belongs to the methyltransferase superfamily. TrmY family.
  
     0.586
PH1809
261aa long hypothetical glucose 1-dehydrogenase; Similar to Swiss_Prot:P39640 percent identity:29.098 in 252aa; Swiss_Prot:P39484 percent identity:29.461 in 255aa.
       0.572
PH1810
158aa long hypothetical protein.
       0.572
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.