STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH0055103aa long hypothetical protein. (103 aa)    
Predicted Functional Partners:
PH0216
296aa long hypothetical protein.
      
 0.649
PH0221
235aa long hypothetical protein.
      
 0.649
PHS009
65aa long hypothetical protein; Motif=prokaryotic membrane lipoprotein lipid attachment site.
      
 0.649
PH0428
105aa long hypothetical protein.
      
 0.649
PH1184
129aa long hypothetical protein.
      
 0.649
PH1187
128aa long hypothetical protein.
      
 0.649
PH1741
113aa long hypothetical protein.
      
 0.649
PH1861
112aa long hypothetical protein.
      
 0.649
PH0054
328aa long hypothetical 1-aminocyclopropane-1-carboxylate deaminase; Similar to owl:D9083216 percent identity: 41.100 in 319aa; Swiss_Prot:Q00740 percent identity: 33.333 in 323aa; Swiss_Prot:P30297 percent identity: 33.113 in 322aa; Belongs to the ACC deaminase/D-cysteine desulfhydrase family.
       0.564
PH0052
227aa long hypothetical fibrillarin-like pre-rRNA processing protein; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family.
       0.422
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.