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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH0162690aa long hypothetical protein; Motif=tubulin-beta mRNA autoregulation signal. (690 aa)    
Predicted Functional Partners:
PH0165
291aa long hypothetical protein.
 
 
 0.999
PH0166
284aa long hypothetical protein.
 
 
 0.998
PH0164
160aa long hypothetical protein.
  
 
 0.996
PH0167
385aa long hypothetical protein; motif=ATP/GTP-binding site motif A (P-loop).
 
 
 0.996
PH0168
417aa long hypothetical protein; Similar to PIR:H64507 percent identity: 37.658 in 338aa.
     
 0.861
PH0171
227aa long hypothetical protein; Motif=zinc carboxypeptidases, zinc-binding regions signatures.
  
  
 0.845
PH0170
336aa long hypothetical protein.
 
  
 0.838
PH0169
431aa long hypothetical protein.
       0.773
PH0161
242aa long hypothetical protein; Similar to PIR:A64454 percent identity: 54.587 in 224aa.
 
   
 0.721
PH0173
317aa long hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.502
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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