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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH0334187aa long hypothetical protein. (187 aa)    
Predicted Functional Partners:
PH0335
212aa long hypothetical protein.
       0.572
PH0336
335aa long hypothetical protein; Similar to PIR:S76512 percent identity: 38.191 in 201aa; Swiss_Prot:P11666 percent identity: 31.282 in 195aa; owl:HPAE0006071 percent identity: 29.958 in 240aa.
       0.572
PH0337
210aa long hypothetical protein.
       0.489
PH0338
329aa long hypothetical protein; Similar to PIR:F64388 percent identity:45.283 in 168aa; Swiss_Prot:P05409 percent identity:39.423 in 111aa. motif=N-6 Adenine-specific DNA methylases signature.
       0.428
PH0340
740aa long hypothetical protein; Similar to PIR:E64449 percent identity: 50.959 in 763aa.
       0.416
PH0343
170aa long hypothetical protein; Catalyzes the formation of CDP-2,3-bis-(O-geranylgeranyl)-sn- glycerol (CDP-archaeol) from 2,3-bis-(O-geranylgeranyl)-sn-glycerol 1- phosphate (DGGGP) and CTP. This reaction is the third ether-bond- formation step in the biosynthesis of archaeal membrane lipids.
       0.416
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.