Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PH0355109aa long hypothetical protein. (109 aa)    
Predicted Functional Partners:
PH0356
370aa long hypothetical protein; Similar to PIR:G64489 percent identity: 28.736 in 369aa.
 
     0.924
PH0353
134aa long hypothetical protein; Similar to PIR:F64475 percent identity: 55.118 in 129aa; Belongs to the UPF0107 family.
       0.773
PH0354
388aa long hypothetical protein; Similar to PIR:H64463 percent identity: 57.650 in 388aa. motif=ATP/GTP-binding site motif A (P-loop).
       0.773
PH0596
206aa long hypothetical pyrrolidone-carboxylate peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.
       0.671
PH0620
664aa long hypothetical protein.
 
     0.633
PH0084
158aa long hypothetical protein.
       0.611
PH0006
274aa long hypothetical protein; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.
  
     0.574
PH0351
373aa long hypothetical protein; Similar to PIR:S76517 percent identity: 38.434 in 291aa. motif=neutral zinc metallopeptidases, zinc-binding region signature.
       0.553
PH0357
520aa long hypothetical protein.
       0.533
PH0358
136aa long hypothetical protein; Similar to PIR:G64452 percent identity:40.496 in 129aa; Belongs to the UPF0216 family.
       0.533
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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