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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH0355109aa long hypothetical protein. (109 aa)    
Predicted Functional Partners:
PH0356
370aa long hypothetical protein; Similar to PIR:G64489 percent identity: 28.736 in 369aa.
 
     0.832
PH0353
134aa long hypothetical protein; Similar to PIR:F64475 percent identity: 55.118 in 129aa; Belongs to the UPF0107 family.
       0.773
PH0354
388aa long hypothetical protein; Similar to PIR:H64463 percent identity: 57.650 in 388aa. motif=ATP/GTP-binding site motif A (P-loop).
       0.773
PH0006
274aa long hypothetical protein; D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.
  
     0.574
PH0351
373aa long hypothetical protein; Similar to PIR:S76517 percent identity: 38.434 in 291aa. motif=neutral zinc metallopeptidases, zinc-binding region signature.
       0.553
PH0357
520aa long hypothetical protein.
       0.533
PH0358
136aa long hypothetical protein; Similar to PIR:G64452 percent identity:40.496 in 129aa; Belongs to the UPF0216 family.
       0.533
PHS032
97aa long hypothetical 50S ribosomal protein L21; Similar to Swiss_Prot:P54013 percent identity: 67.368 in 95aa; Swiss_Prot:P12734 percent identity: 51.163 in 86aa; GENPEPT:F20014 percent identity: 37.500 in 72aa; Belongs to the eukaryotic ribosomal protein eL21 family.
  
     0.504
PH0350
239aa long hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA), also called psiRNA (prokaryotic silencing) in this organism (Potential). Belongs to the CRISPR-associated protein Cas6/Cse3/CasE family.
       0.422
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.