STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH0378318aa long hypothetical UDP-glucose 4-epimerase; Similar to PIR:S44960 percent identity:40.645 in 320aa; PIR:S69807 percent identity:41.100 in 319aa; owl:MTY13D1217 percent identity:39.171 in 224aa. (318 aa)    
Predicted Functional Partners:
PH0060
199aa long hypothetical 30S ribosomal protein S3a; Similar to Swiss_Prot:P54059 percent identity: 41.579 in 190aa; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 0.937
PH0365
327aa long hypothetical galactose-1-phosphate uridyltransferase; Similar to owl:MTCY19H51 percent identity: 33.918 in 173aa; Swiss_Prot:P31764 percent identity: 29.730 in 226aa; owl:HIGALTKMR1 percent identity: 29.279 in 226aa. motif=tubulin-beta mRNA autoregulation signal.
  
 
 0.925
PHS047
56aa long hypothetical 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles.
  
 0.915
PH1742
306aa long hypothetical UDP-glucose 4-epimerase; Similar to PIR:D64326 percent identity: 44.667 in 308aa; owl:MTY15C1017 percent identity: 39.116 in 306aa; owl:SSU343051 percent identity: 40.940 in 320aa. motif=short-chain dehydrogenases/reductases family signature.
 
  
 
0.913
PH1542
150aa long hypothetical 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
   
 0.912
PH1774
132aa long hypothetical 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
 0.912
PH0058
158aa long hypothetical 40S ribosomal protein S13; Similar to Swiss_Prot:P54012 percent identity: 70.667 in 157aa; Swiss_Prot:Q05761 percent identity: 50.000 in 157aa; Swiss_Prot:P49203 percent identity: 48.649 in 155aa. motif=ribosomal protein S15 signature.
 
 0.906
PH1772
210aa long hypothetical 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
   
 0.903
PH1770
116aa long hypothetical 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 0.899
PH1764
130aa long hypothetical 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
   
 0.898
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.