Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PH0388171aa long hypothetical protein. (171 aa)    
Predicted Functional Partners:
PH0383
633aa long hypothetical protein.
       0.834
PH0384
330aa long hypothetical protein; Similar to Swiss_Prot:P25769 percent identity:29.474 in 97aa.
       0.834
PH0385
312aa long hypothetical protein; Similar to owl:BSU511154 percent identity: 45.151 in 300aa; PIR:S75782 percent identity: 48.029 in 282aa; PIR:S74593 percent identity: 43.607 in 311aa.
       0.794
PH0387
422aa long hypothetical protein.
       0.794
PH0382
176aa long hypothetical protein.
       0.598
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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