STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH0416188aa long hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (188 aa)    
Predicted Functional Partners:
PH0417
290aa long hypothetical dTDP-4-dehydrorhamnose reductase; Similar to PIR:S74471 percent identity: 40.948 in 244aa; Swiss_Prot:P39631 percent identity: 37.500 in 265aa; owl:SPU0923914 percent identity: 38.043 in 286aa.
 
 0.999
PH0414
336aa long hypothetical dTDP-glucose 4,6-dehydratase; Similar to owl:SERORF11 percent identity: 50.158 in 322aa; owl:MTY13E1216 percent identity: 51.266 in 324aa; owl:SAMTMDE1 percent identity: 48.571 in 318aa.
 
 
 0.998
PH0413
356aa long hypothetical glucose-1-phosphate thymidylyltransferase; Similar to owl:SAMTMDE percent identity: 53.890 in 352aa; Swiss_Prot:P08075 percent identity: 50.720 in 352aa; PIR:S76366 percent identity: 51.143 in 358aa.
 
  
 0.987
PH0390
408aa long hypothetical protein; Similar to owl:YEU468597 percent identity:21.039 in 390aa.
  
  
 0.867
PH0421
432aa long hypothetical lipopolysaccharide O-side chain biosynthesis protein (O-antigen transpoter); Similar to owl:YEU468597 percent identity: 21.446 in 406aa.
  
  
 0.867
PH1590
264aa long hypothetical protein; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
     
 0.723
PH0424
348aa long hypothetical protein.
  
  
 0.720
PH1446
206aa long hypothetical NADH-plastoquinone oxidoreductase subunit; Similar to Swiss_Prot:P06253 percent identity:34.615 in 105aa; Swiss_Prot:Q00236 percent identity:34.314 in 103aa; Swiss_Prot:P06252 percent identity:34.615 in 105aa. motif=4Fe-4S ferredoxins, iron-sulfur binding region signature.
      
 0.701
PH0380
327aa long hypothetical glucose-1 phosphate transferase; Similar to owl:SVAVIMDE1 percent identity:30.325 in 285aa; owl:SAMTMDE percent identity:30.108 in 287aa. motif=lipocalin signature.
  
  
 0.681
PH1022
416aa long hypothetical sugar-phosphate nucleotydyl transferase; Similar to Swiss_Prot:P41940 percent identity: 33.429 in 363aa; owl:S76785 percent identity: 34.930 in 367aa; owl:D89128 percent identity: 31.792 in 361aa. motif=serine proteases, subtilase family, active sites.
  
  
 0.681
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.