Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PH0421432aa long hypothetical lipopolysaccharide O-side chain biosynthesis protein (O-antigen transpoter); Similar to owl:YEU468597 percent identity: 21.446 in 406aa. (432 aa)    
Predicted Functional Partners:
PH0426
403aa long hypothetical protein.
 
  
 0.911
PH0424
348aa long hypothetical protein.
 
  
 0.900
PH0413
356aa long hypothetical glucose-1-phosphate thymidylyltransferase; Similar to owl:SAMTMDE percent identity: 53.890 in 352aa; Swiss_Prot:P08075 percent identity: 50.720 in 352aa; PIR:S76366 percent identity: 51.143 in 358aa.
  
  
 0.860
PH0414
336aa long hypothetical dTDP-glucose 4,6-dehydratase; Similar to owl:SERORF11 percent identity: 50.158 in 322aa; owl:MTY13E1216 percent identity: 51.266 in 324aa; owl:SAMTMDE1 percent identity: 48.571 in 318aa.
  
  
 0.859
PH0416
188aa long hypothetical dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.859
PH0429
455aa long hypothetical Vi polysaccharide biosynthesis protein; Similar to owl:PAU503961 percent identity: 47.238 in 367aa; Swiss_Prot:P39861 percent identity: 44.103 in 396aa; Swiss_Prot:Q04972 percent identity: 39.340 in 399aa; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.830
PH0425
440aa long hypothetical protein.
  
    0.820
PH0430
334aa long hypothetical protein; Similar to Swiss_Prot:P22639 percent identity: 42.991 in 107aa.
 
  
 0.775
PH0422
456aa long hypothetical protein.
       0.773
PH0423
389aa long hypothetical protein.
       0.773
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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