STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH0425440aa long hypothetical protein. (440 aa)    
Predicted Functional Partners:
PH0421
432aa long hypothetical lipopolysaccharide O-side chain biosynthesis protein (O-antigen transpoter); Similar to owl:YEU468597 percent identity: 21.446 in 406aa.
  
  
 0.824
PH0424
348aa long hypothetical protein.
  
    0.814
PH0426
403aa long hypothetical protein.
  
  
 0.785
PH0422
456aa long hypothetical protein.
       0.773
PH0423
389aa long hypothetical protein.
       0.773
PH0430
334aa long hypothetical protein; Similar to Swiss_Prot:P22639 percent identity: 42.991 in 107aa.
  
  
 0.719
PH0429
455aa long hypothetical Vi polysaccharide biosynthesis protein; Similar to owl:PAU503961 percent identity: 47.238 in 367aa; Swiss_Prot:P39861 percent identity: 44.103 in 396aa; Swiss_Prot:Q04972 percent identity: 39.340 in 399aa; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.706
PH1140
507aa long hypothetical protein.
  
    0.601
PH1141
502aa long hypothetical protein; Motif=prokaryotic membrane lipoprotein lipid attachment site.
  
    0.601
PH1239
237aa long hypothetical protein.
 
  
 0.599
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.