Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PH0718398aa long hypothetical protein; Similar to PIR:D64464 percent identity: 41.848 in 385aa. (398 aa)    
Predicted Functional Partners:
PH0716
296aa long hypothetical protein.
       0.723
PH0717
395aa long hypothetical protein.
       0.723
PH1136
131aa long hypothetical protein; Similar to owl:HPAE00055712 percent identity:29.670 in 91aa.
     
 0.679
PH0066
328aa long hypothetical L-asparaginase; Similar to Swiss_Prot:P26900 percent identity: 40.373 in 326aa; Swiss_Prot:P18840 percent identity: 38.768 in 278aa; PIR:D64302 percent identity: 39.502 in 297aa. motif=asparaginase / glutaminase active sites signatures.
       0.671
PH1135
134aa long hypothetical protein.
       0.652
PH0999
180aa long hypothetical pyrazinamidase/nicotinamidase; Similar to owl:AF0082061 percent identity: 39.884 in 183aa; owl:MTU59967 percent identity: 39.306 in 182aa; Swiss_Prot:P21369 percent identity: 41.954 in 199aa.
  
    0.589
PH0667
413aa long hypothetical protein.
  
     0.568
PH0233
387aa long hypothetical protein.
  
     0.433
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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