STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH0849443aa long hypothetical protein. (443 aa)    
Predicted Functional Partners:
PH0848
481aa long hypothetical protein; Similar to PIR:D64424 percent identity: 35.535 in 456aa; owl:MTCY3G1218 percent identity: 30.022 in 478aa; Swiss_Prot:P45297 percent identity: 25.909 in 453aa.
 
   
0.869
PH0847
287aa long hypothetical dihydrodipicoline synthase; Similar to Swiss_Prot:P39359 percent identity: 34.386 in 289aa; owl:ECAE0001348 percent identity: 35.448 in 272aa; PIR:E64330 percent identity: 40.664 in 249aa; Belongs to the DapA family.
     
 0.600
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.