STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH10951044aa long hypothetical translation initiation factor IF-2; Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2 (By similarity). (1044 aa)    
Predicted Functional Partners:
PH0058
158aa long hypothetical 40S ribosomal protein S13; Similar to Swiss_Prot:P54012 percent identity: 70.667 in 157aa; Swiss_Prot:Q05761 percent identity: 50.000 in 157aa; Swiss_Prot:P49203 percent identity: 48.649 in 155aa. motif=ribosomal protein S15 signature.
 
 
 0.999
PH0060
199aa long hypothetical 30S ribosomal protein S3a; Similar to Swiss_Prot:P54059 percent identity: 41.579 in 190aa; Belongs to the eukaryotic ribosomal protein eS1 family.
 
 
 0.999
PH0615
125aa long hypothetical 30S ribosomal protein S6E; Similar to Swiss_Prot:P54067 percent identity: 64.545 in 124aa. motif=ribosomal protein S6e signature; Belongs to the eukaryotic ribosomal protein eS6 family.
 
 
 0.999
PH1103
127aa long hypothetical 30S ribosomal protein S8; Similar to Swiss_Prot:P54055 percent identity: 62.992 in 129aa; Swiss_Prot:P49402 percent identity: 49.167 in 122aa.
   
 
 0.999
PH1325
150aa long hypothetical 30S ribosomal protein S19; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
   
   0.999
PH1483
102aa long hypothetical 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
 
 0.999
PHS040
71aa long hypothetical 50S ribosomal protein S28; Similar to Swiss_Prot:P54065 percent identity: 64.179 in 67aa; Swiss_Prot:P33286 percent identity: 62.069 in 60aa; Swiss_Prot:P33285 percent identity: 62.069 in 60aa; Belongs to the eukaryotic ribosomal protein eS28 family.
  
 
 0.999
PH1496
124aa long hypothetical 50S ribosomal protein L7; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs (By similarity). When added to reconstituted ribonuclease P (RNase P) it increases the optimum temperature to that of the partially purified enzyme and causes a 5-fold increase in apparent Vmax. Binds the RNase P catalytic RNA.
  
 
 0.999
PH1541
218aa long hypothetical 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center (By similarity); Belongs to the universal ribosomal protein uS7 family.
 
 
 0.999
PH1542
150aa long hypothetical 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
 
 
 0.999
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.