STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH1138618aa long hypothetical indolepyruvate ferredoxin oxidoreductase alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. (618 aa)    
Predicted Functional Partners:
PH0764
202aa long hypothetical indolepyruvate ferredoxin oxidoreductase beta subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
 
 0.978
PH0229
196aa long hypothetical indolepyruvate ferredoxin oxidoreductase beta subunit; Similar to owl:D862211 percent identity: 49.167 in 120aa.
 
 
 0.975
PH0245
197aa long hypothetical proteasome beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
      
 0.647
PH1553
260aa long hypothetical proteasome, alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
      
 0.647
PH1137
407aa long hypothetical RNA methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 54 (m5U54) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.646
PH0555
164aa long hypothetical protein; Similar to PIR:B64412 percent identity: 40.690 in 151aa. motif=aminoacyl-transfer RNA synthetases class-I signature.
      
 0.618
PH1139
494aa long hypothetical protein; Similar to owl:AF008220136 percent identity: 29.550 in 500aa. motif=uncharacterized protein family UPF0006 signatures.
       0.597
PH1140
507aa long hypothetical protein.
       0.571
PH1141
502aa long hypothetical protein; Motif=prokaryotic membrane lipoprotein lipid attachment site.
       0.571
PH1663
170aa long hypothetical ferredoxin oxidoreductase gamma subunit; Similar to PIR:H64366 percent identity: 48.824 in 177aa.
 
 
 0.484
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.