STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH1213223aa long hypothetical protein; Similar to PIR:H64410 percent identity:36.782 in 183aa. (223 aa)    
Predicted Functional Partners:
PH1134
310aa long hypothetical protein; Similar to PIR:B64440 percent identity: 51.485 in 203aa.
  
 
 0.632
PH1242
262aa long hypothetical pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
 
 
 
 0.631
PH1212
176aa long hypothetical thermonuclease; Similar to PIR:F64479 percent identity:40.136 in 157aa; owl:BSU6648019 percent identity:38.889 in 93aa. motif=prokaryotic membrane lipoprotein lipid attachment site; thermonuclease family signatures.
  
  
 0.499
PH1218
410aa long hypothetical phosphoglycerate kinase; Similar to Swiss_Prot:P50316 percent identity: 77.995 in 409aa; PIR:A64380 percent identity: 50.125 in 413aa; Swiss_Prot:P20971 percent identity: 44.275 in 401aa. motif=phosphoglycerate kinase signature.
 
  
 0.493
PH1214
441aa long hypothetical cytoplasmic protein; Probably part of a binding-protein-dependent transport system PH1214/15/16; Belongs to the bacterial solute-binding protein 1 family.
  
    0.459
PH1770
116aa long hypothetical 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
   0.456
PH0743
375aa long hypothetical alchol dehydrogenase; Similar to Swiss_Prot:P13604 percent identity:40.385 in 381aa; owl:APU550163 percent identity:44.053 in 235aa; owl:EHU04863 percent identity:38.971 in 282aa.
 
 
 0.446
PH1211
194aa long hypothetical protein; Motif=prokaryotic membrane lipoprotein lipid attachment site.
       0.441
PH1215
292aa long hypothetical sugar-binding transport system permease protein; Probably part of a binding-protein-dependent transport system PH1214/15/16. Probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. MalFG subfamily.
  
  
 0.441
PH1216
275aa long hypothetical protein; Probably part of a binding-protein-dependent transport system PH1214/15/16. Probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. MalFG subfamily.
  
    0.434
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.