Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PH1364382aa long hypothetical sarcosine oxidase; Similar to Swiss_Prot:P40875 percent identity: 29.752 in 377aa; owl:I40887 percent identity: 29.477 in 377aa. (382 aa)    
Predicted Functional Partners:
PH1363
493aa long hypothetical protein.
 
 0.999
PH1749
482aa long hypothetical D-nopaline dehydrogenase; Similar to PIR:S55589 percent identity:27.077 in 336aa. motif=2Fe-2S ferredoxins, iron-sulfur binding region signature.
 
 0.990
PH1146
401aa long hypothetical aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
 
 
 0.959
PH1750
168aa long hypothetical ferredoxin; Similar to PIR:A42960 percent identity:37.209 in 43aa; Swiss_Prot:P00202 percent identity:37.209 in 43aa. motif=4Fe-4S ferredoxins, iron-sulfur binding region signature.
 
  
 0.872
PH1360
154aa long hypothetical protein.
       0.703
PH0667
413aa long hypothetical protein.
  
  
 0.608
PH1361
537aa long hypothetical proline permease; Similar to owl:BSU924662 percent identity: 35.581 in 436aa; owl:HPAE0005273 percent identity: 36.406 in 440aa; owl:D5045324 percent identity: 37.692 in 396aa. motif=prokaryotic membrane lipoprotein lipid attachment site; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.589
PH1751
377aa long hypothetical sarcosine oxidase; Similar to PIR:S16133 percent identity:37.104 in 227aa; PIR:I40887 percent identity:28.487 in 352aa.
       0.576
PH1366
308aa long hypothetical ATP-binding transport protein; Similar to owl:D785084 percent identity: 40.367 in 218aa; Swiss_Prot:P54592 percent identity: 42.361 in 297aa. motif=ABC transporters family signature; ATP/GTP-binding site motif A (P-loop).
     
 0.559
PH1365
310aa long hypothetical protein.
       0.552
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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