STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH1680320aa long hypothetical protein; Similar to PIR:E64444 percent identity: 40.203 in 305aa; PIR:E64484 percent identity: 37.500 in 311aa; owl:S71668 percent identity: 37.008 in 260aa. (320 aa)    
Predicted Functional Partners:
PH1151
307aa long hypothetical sulfatase; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
  
  
 0.725
PH1858
253aa long hypothetical protein; Similar to PIR:F64316 percent identity: 47.059 in 269aa; owl:MTCY26113 percent identity: 36.145 in 254aa; owl:S72844 percent identity: 35.887 in 259aa.
 
  
 0.624
PH1538
409aa long hypothetical protein; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
 
 
 0.545
PH1678
481aa long hypothetical protein.
  
    0.543
PH1867
617aa long hypothetical protein; Similar to PIR:G64441 percent identity: 54.442 in 577aa; owl:CEZK8632 percent identity: 45.265 in 581aa; owl:SPAC29A418 percent identity: 45.977 in 576aa.
  
 
 0.527
PH1675
377aa long hypothetical protein.
       0.524
PH1679
259aa long hypothetical protein.
       0.524
PH1617
336aa long hypothetical UDP-N-acetylglucosamine 2-epimerase; Similar to PIR:G64487 percent identity: 57.143 in 132aa; owl:SAU8197315 percent identity: 43.925 in 107aa.
  
  
 0.457
PH1325
150aa long hypothetical 30S ribosomal protein S19; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
  
     0.446
PH1242
262aa long hypothetical pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
  
 
 0.443
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.