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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PH1958335aa long hypothetical oligopeptide transport ATP-binding protein appF; Similar to Swiss_Prot:P42065 percent identity: 46.563 in 328aa; owl:BACSPO0K6 percent identity: 50.617 in 245aa; Swiss_Prot:P24137 percent identity: 50.617 in 245aa. motif=ABC transporters family signature; ATP/GTP-binding site motif A (P-loop). (335 aa)    
Predicted Functional Partners:
PH1960
474aa long hypothetical oligopeptide transport system permease protein appC; Similar to owl:MMABCTRAN2 percent identity: 38.967 in 215aa; Swiss_Prot:P24139 percent identity: 38.182 in 226aa; Swiss_Prot:P26904 percent identity: 40.271 in 226aa. motif=binding-protein-dependent transport systems inner membrane componentsignature.
 
 0.982
PH1411
385aa long hypothetical dipeptide transport system permease protein dppC; Similar to Swiss_Prot:P37315 percent identity: 44.091 in 251aa; owl:BFU645142 percent identity: 43.578 in 249aa; owl:HPAE0005486 percent identity: 43.836 in 250aa. motif=binding-protein-dependent transport systems inner membrane componentsignature.
 
 0.958
PH0809
283aa long hypothetical oligopeptide transport permease protein APPC; Similar to Swiss_Prot:P42063 percent identity: 38.846 in 264aa; owl:BFU645142 percent identity: 39.630 in 272aa; owl:HPAE0005486 percent identity: 40.075 in 275aa.
 
 0.948
PH0504
304aa long hypothetical oligopeptide transport system permease protein AppC; Similar to owl:MMABCTRAN2 percent identity: 40.000 in 216aa; Swiss_Prot:P42063 percent identity: 33.484 in 222aa; PIR:JC5121 percent identity: 34.978 in 228aa.
 
 0.926
PH1959
322aa long hypothetical oligopeptide transport ATP-binding protein appD; Similar to Swiss_Prot:P42064 percent identity: 47.604 in 317aa; Swiss_Prot:P04285 percent identity: 49.832 in 301aa; Swiss_Prot:P24136 percent identity: 50.000 in 321aa. motif=ABC transporters family signature; ATP/GTP-binding site motif A (P-loop); pr.
 
   
0.891
PH1961
349aa long hypothetical oligopeptide transport system permease protein appB; Similar to Swiss_Prot:P42062 percent identity: 32.599 in 230aa; owl:S76320 percent identity: 31.646 in 240aa.
  
 0.871
PH1957
177aa long hypothetical protein.
     
 0.805
PH1956
192aa long hypothetical protein.
       0.757
PH1962
841aa long hypothetical protein.
 
     0.615
PH0810
327aa long hypothetical oligopeptide transport ATP-binding protein APPD; Similar to owl:RSPNGR2342 percent identity: 43.689 in 317aa; Swiss_Prot:P37314 percent identity: 40.256 in 317aa; Swiss_Prot:P45052 percent identity: 39.228 in 317aa. motif=ABC transporters family signature; ATP/GTP-binding site motif A (P-loop).
 
   
0.554
Your Current Organism:
Pyrococcus horikoshii
NCBI taxonomy Id: 70601
Other names: P. horikoshii OT3, Pyrococcus horikoshii OT-3, Pyrococcus horikoshii OT3, Pyrococcus horikoshii str. OT3, Pyrococcus shinkaii OT3, Pyrococcus sp. OT3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.