Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rbsRRbsR; Ribose operon repressor; Similar to Pantoea sp. At-9b, transcriptional regulator, LacI family (NCBI: ZP_05729590.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (352 aa)    
Predicted Functional Partners:
rbsK
RbsK; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.814
rbsB
RbsB; D-ribose-binding periplasmic protein precursor; Similar to Pantoea sp. At-9b, Monosaccharide-transporting ATPase (NCBI: ZP_05729592.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
 
   
0.774
rbsC
RbsC; Ribose transport system permease protein RbsC; Similar to Pantoea sp. At-9b, Monosaccharide-transporting ATPase (NCBI: ZP_05729593.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
    0.688
rbsA
RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
    0.687
dhaM
DhaM; Component of the dihydroxyacetone kinase complex, which is responsible for the phosphoenolpyruvate (PEP)-dependent phosphorylation of dihydroxyacetone. DhaM serves as the phosphoryl donor. Is phosphorylated by phosphoenolpyruvate in an EI- and HPr-dependent reaction, and a phosphorelay system on histidine residues finally leads to phosphoryl transfer to DhaL and dihydroxyacetone.
 
 
 
 0.588
gltA
GltA; Glutamate synthase [NADPH] large chain; Similar to Pantoea sp. At-9b, Glutamate synthase (ferredoxin) (NCBI: ZP_05730857.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
    
 
 0.581
PANA_0007
Hypothetical Protein; No significant BLAST hits found; COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.494
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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