Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
qseBQseB; Transcriptional regulatory protein QseB; Similar to Pantoea sp. At-9b, two component transcriptional regulator, winged helix family (NCBI: ZP_05729598.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (223 aa)    
Predicted Functional Partners:
qseC
QseC; Sensor protein QseC; Similar to Pantoea sp. At-9b, histidine kinase (NCBI: ZP_05729599.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.999
qseC-2
QseC; Sensor protein QseC; Similar to Pantoea sp. At-9b, histidine kinase (NCBI: ZP_05732325.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.957
qseC-3
QseC; Sensor protein QseC; Similar to Pantoea sp. At-9b, histidine kinase (NCBI: ZP_05730608.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.926
arcB
ArcB; Aerobic respiration control sensor protein ArcB; Similar to Pantoea sp. At-9b, multi-sensor hybrid histidine kinase (NCBI: ZP_05730859.1); COG: Signal transduction mechanism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
 
 0.834
pmrB
PmrB; Sensor protein BasS/PmrB; Similar to Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, sensor protein BasS/PmrB (NCBI: YP_001572340.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.813
barA
BarA; Sensor protein barA; Similar to Pantoea sp. At-9b, Hpt sensor hybrid histidine kinase (NCBI: ZP_05732155.1); COG: Signal transduction mechanism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.768
cpxA
CpxA; Sensor protein CpxA; Similar to Pantoea sp. At-9b, histidine kinase (NCBI: ZP_05727666.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.764
baeS-3
BaeS; Sensor protein BaeS; Similar to Klebsiella variicola At-22, histidine kinase (NCBI: ZP_06164315.1); COG: Signal transduction mechanism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.746
ygiW
YgiW; Protein YgiW precursor; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05729597.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
  
 0.708
cpxA-2
CpxA; Sensor protein CpxA; Similar to Pantoea sp. At-9b, histidine kinase (NCBI: ZP_05730358.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.697
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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