STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mipAMipA; MltA-interacting protein precursor; Similar to Enterobacter sp. 638, MltA-interacting MipA family protein (NCBI: YP_001175822.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane. (246 aa)    
Predicted Functional Partners:
yiaF
YiaF; Lipoprotein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05729719.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.640
cybC
CybC; Soluble cytochrome b562 precursor; Similar to Citrobacter youngae ATCC 29220, hypothetical protein CIT292_00650 (NCBI: ZP_03834947.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Periplasmic.
  
    0.545
yacC
YacC; Periplasmic Protein YacC; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05729836.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.542
rcsF
RcsF; Protein rcsF; Similar to Pantoea sp. At-9b, regulator in colanic acid synthesis (NCBI: ZP_05731588.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
  
     0.527
ygaC
YgaC; Cytoplasmic Protein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05727848.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.525
yhhL
YhhL; Inner Membrane Protein YhhL; Similar to Klebsiella pneumoniae subsp. pneumoniae MGH 78578, hypothetical protein KPN_03832 (NCBI: YP_001337486.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.517
yggN
YggN; Periplasmic Protein; Similar to Enterobacter helveticus, Uncharacterized protein yggN (NCBI: CAZ90543.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Extracellular.
  
     0.491
yfhB
YfhB; Hypothetical protein YfhB; Similar to Pantoea sp. At-9b, HAD superfamily (subfamily IF) hydrolase, YfhB (NCBI: ZP_05727793.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.478
PANA_2801
Inner Membrane Protein; Similar to Erwinia pyrifoliae Ep1/96, hypothetical protein YpfN (NCBI: YP_002648142.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.474
ydgH
YdgH; Protein YdgH precursor; Similar to Yersinia rohdei ATCC 43380, NAD(P) transhydrogenase subunit alpha (NCBI: ZP_04610857.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Extracellular.
  
    0.458
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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