STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacZLacZ; Beta-galactosidase; Similar to Citrobacter youngae ATCC 29220, hypothetical protein CIT292_01323 (NCBI: ZP_03835551.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the glycosyl hydrolase 2 family. (1028 aa)    
Predicted Functional Partners:
galM
GalM; Converts alpha-aldose to the beta-anomer.
 
 
 0.937
melA
MelA; Alpha-galactosidase; Similar to Citrobacter sp. 30_2, alpha-galactosidase (NCBI: ZP_04558684.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
 
  
 0.920
yihR
YihR; Aldose-1-Epimerase; Similar to Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, hypothetical protein SPA3861 (NCBI: YP_152941.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
 
 0.918
glk
Glk; Glucokinase; Similar to Pantoea sp. At-9b, glucokinase (NCBI: ZP_05727641.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the bacterial glucokinase family.
     
 0.908
lacY
LacY; Lactose permease; Similar to Escherichia coli CFT073, galactoside permease (NCBI: NP_752393.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
  
 0.898
galK
GalK; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.888
xylA
XylA; Xylose isomerase; Similar to Pantoea sp. At-9b, xylose isomerase (NCBI: ZP_05729685.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the xylose isomerase family.
    
 0.837
fruK
FruK; 1-phosphofructokinase; Similar to Pantoea sp. At-9b, 1-phosphofructokinase (NCBI: ZP_05730908.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.788
ptrA
PtrA; Protease III precursor; Similar to Pantoea sp. At-9b, peptidase M16 domain protein (NCBI: ZP_05732183.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
      
 0.623
scrB
ScrB; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.601
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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