STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gnlGnl; Gluconolactonase precursor; Similar to Pantoea sp. At-9b, Gluconolactonase (NCBI: ZP_05728077.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown. (287 aa)    
Predicted Functional Partners:
gcd
Gcd; Quinoprotein glucose dehydrogenase; Similar to Pantoea sp. At-9b, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family (NCBI: ZP_05732330.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
  
 0.943
PANA_0301
Hypothetical Protein; Oxidoreductase; Similar to Pantoea sp. At-9b, Gluconate 2-dehydrogenase (acceptor) (NCBI: ZP_05732065.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
 
 0.938
PANA_0300
Hypothetical Protein; Similar to Pantoea sp. At-9b, Gluconate 2-dehydrogenase (acceptor) (NCBI: ZP_05732064.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
     
 0.936
gnl-2
Gnl; Gluconolactonase precursor; Similar to Burkholderia phymatum STM815, SMP-30/gluconolaconase/LRE domain-containing protein (NCBI: YP_001862137.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
  
 
0.925
adhB-2
AdhB; Alcohol dehydrogenase cytochrome c subunit precursor; Similar to Pantoea sp. At-9b, glucose-methanol-choline oxidoreductase (NCBI: ZP_05731253.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.924
gntK
GntK; Thermoresistant gluconokinase; Similar to Pantoea sp. At-9b, carbohydrate kinase, thermoresistant glucokinase family (NCBI: ZP_05731707.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
    
 0.911
tkrA
TkrA; 2-ketogluconate reductase; Similar to Pantoea sp. At-9b, D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (NCBI: ZP_05729655.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
 
 0.905
PANA_0367
Hypothetical Protein; ABC-Type Sugar Transport System Periplasmic Component; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05728076.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
 
     0.881
rbsC-3
RbsC; Ribose transport system permease protein RbsC; Similar to Pantoea sp. At-9b, Monosaccharide-transporting ATPase (NCBI: ZP_05728075.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
     0.837
rbsA-3
RbsA; Ribose transport ATP-binding protein RbsA; Similar to Pantoea sp. At-9b, ABC transporter related protein (NCBI: ZP_05728074.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
     0.772
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.