STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vatVat; Virginiamycin A acetyltransferase; Similar to Thioalkalivibrio sp. HL-EbGR7, streptogramin A acetyl transferase (NCBI: YP_002515225.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Unknown. (211 aa)    
Predicted Functional Partners:
amsG-2
AmsG; UDP-galactose-lipid carrier transferase; Similar to Pantoea stewartii subsp. stewartii, CpsA (NCBI: AAC27321.2); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
  
 0.745
amsA
AmsA; Putative tyrosine-protein kinase AmsA; Similar to Pantoea stewartii subsp. stewartii, CpsC (NCBI: ACO05913.1); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
  
 0.534
argE
ArgE; Acetylornithine deacetylase; Similar to Klebsiella variicola At-22, acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase (NCBI: ZP_06164337.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.504
PANA_0504
Cytoplasmic Protein; Similar to Klebsiella pneumoniae 342, hypothetical protein KPK_2646 (NCBI: YP_002238476.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.504
pteR
Pter; Phosphotriesterase related protein; Similar to Klebsiella pneumoniae 342, phosphotriesterase family protein (NCBI: YP_002238477.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.494
rbsC-4
RbsC; Ribose transport system permease protein RbsC; Similar to Pantoea sp. At-9b, Monosaccharide-transporting ATPase (NCBI: ZP_05729856.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.494
rbsA-4
RbsA; Ribose transport ATP-binding protein RbsA; Similar to Klebsiella pneumoniae subsp. pneumoniae MGH 78578, putative ABC transporter (NCBI: YP_001335393.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.494
rffA
RffA; Catalyzes the synthesis of dTDP-4-amino-4,6-dideoxy-D- galactose (dTDP-Fuc4N) from dTDP-4-keto-6-deoxy-D-glucose (dTDP-D- Glc4O) and L-glutamate; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.402
spsC
SpsC; Spore coat polysaccharide biosynthesis protein spsC; Similar to Pantoea sp. At-9b, DegT/DnrJ/EryC1/StrS aminotransferase (NCBI: ZP_05728741.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
  
 0.402
arnB
ArnB; Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the DegT/DnrJ/EryC1 family. ArnB subfamily.
  
  
 0.402
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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