STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amsFAmsF; Amylovoran biosynthesis protein AmsF precursor; Similar to Erwinia tasmaniensis Et1/99, Probable virulence factor (NCBI: YP_001907910.1); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown. (582 aa)    
Predicted Functional Partners:
PANA_0896
Hypothetical Protein; Phage Lysozyme; Similar to Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191, hypothetical protein SentesTe_14381 (NCBI: ZP_04656141.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.467
PANA_0897
Hypothetical Protein; Similar to Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884, hypothetical protein HMPREF0484_3767 (NCBI: ZP_06016748.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.444
PANA_0898
Hypothetical Protein; Similar to Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884, conserved hypothetical protein (NCBI: ZP_06016747.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.444
PANA_1063
Hypothetical Protein; Terminase small subunit; Similar to Enterobacter sakazakii ATCC BAA-894, hypothetical protein ESA_03053 (NCBI: YP_001439118.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
  
 0.440
aspH
AspH; Aspartyl/asparaginyl beta- hydroxylase; Similar to Erwinia pyrifoliae Ep1/96, hypothetical protein EpC_26840 (NCBI: YP_002649673.1); COG: Posttranslational modification, protein turnover, chaperones; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.405
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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