STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acoRAcoR; Acetoin catabolism regulatory protein; Similar to Pantoea sp. At-9b, GAF modulated sigma54 specific transcriptional regulator, Fis family (NCBI: ZP_05727470.1); COG: Secondary metabolites biosynthesis, transport and catabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic. (591 aa)    
Predicted Functional Partners:
rpoN
RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.808
aldA
AldA; Aldehyde dehydrogenase; Similar to Pantoea sp. At-9b, Aldehyde Dehydrogenase (NCBI: ZP_05727471.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
 
 
 0.550
dhaK
DhaK; PTS-dependent dihydroxyacetone kinase, dihydroxyacetone binding subunit DhaK; Similar to Escherichia coli E22, PTS-dependent dihydroxyacetone kinase, DhaK subunit (NCBI: ZP_03047581.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
   
 
 0.535
dhaL
DhaL; PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL; Similar to Citrobacter youngae ATCC 29220, hypothetical protein CIT292_02998 (NCBI: ZP_03837072.2); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
   
 
 0.535
adhP
AdhP; Alcohol dehydrogenase; Similar to Pantoea sp. At-9b, Alcohol dehydrogenase GroES domain protein (NCBI: ZP_05727472.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
    0.423
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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