STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdlBMdlB; Multidrug resistance-like ATP- binding protein MdlB; Similar to Pantoea sp. At-9b, ABC transporter related protein (NCBI: ZP_05727497.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (601 aa)    
Predicted Functional Partners:
mdlA
MdlA; Multidrug resistance-like ATP- binding protein MdlA; Similar to Pantoea sp. At-9b, ABC transporter related protein (NCBI: ZP_05727496.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
0.985
ybaO
YbaO; Putative HTH-type transcriptional regulator YbaO; Similar to Pantoea sp. At-9b, transcriptional regulator, AsnC family (NCBI: ZP_05727495.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
  
    0.752
nudB
NudB; dATP pyrophosphohydrolase; Similar to Pantoea sp. At-9b, NUDIX hydrolase (NCBI: ZP_05728682.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Unknown.
  
 
 0.732
nudF
NudF; ADP-ribose pyrophosphatase; Similar to Pantoea sp. At-9b, ADP-ribose diphosphatase (NCBI: ZP_05730447.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Unknown.
      
 0.717
cyaB
CyaB; Cyclolysin secretion/processing ATP-binding protein CyaB; Similar to Yersinia mollaretii ATCC 43969, type I secretion protein, ATP-binding protein (NCBI: ZP_04640952.1); COG: Defense mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
   
 
0.608
amtB
AmtB; Ammonia channel precursor; Similar to Pantoea sp. At-9b, ammonium transporter (NCBI: ZP_05727499.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
   
   0.537
cys11
Cys11; Cysteine synthase 1; Similar to Pantoea sp. At-9b, Pyridoxal-5'-phosphate-dependent protein beta subunit (NCBI: ZP_05727494.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
  
 0.534
glnK
GlnK; Nitrogen regulatory protein P-II 2; Similar to Yersinia ruckeri ATCC 29473, Nitrogen regulatory protein P-II 2 (NCBI: ZP_04615606.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane; Belongs to the P(II) protein family.
     
 0.521
ybaX
YbaX; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
 
     0.496
smp
Smp; Protein Smp precursor; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05730076.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.489
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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