STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybaMYbaM; Hypothetical Protein YbaM; Similar to Erwinia tasmaniensis Et1/99, hypothetical protein ETA_24780 (NCBI: YP_001908400.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown. (51 aa)    
Predicted Functional Partners:
priC
PriC; Primosomal replication protein N'; Similar to Pantoea sp. At-9b, primosomal replication protein N'' (NCBI: ZP_05727517.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Unknown.
     
 0.658
yebU
YebU; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
  
   
 0.530
yeeX
YeeX; Alpha Helix Protein; Similar to Pantoea sp. At-9b, protein of unknown function DUF496 (NCBI: ZP_05729008.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the UPF0265 family.
  
     0.507
fhuD
FhuD; Ferrichrome-binding periplasmic protein precursor; Similar to Pantoea sp. At-9b, periplasmic binding protein (NCBI: ZP_05731546.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
  
     0.485
tsx
Tsx; Nucleoside-specific channel-forming protein tsx precursor; Similar to Pantoea sp. At-9b, nucleoside-specific channel-forming protein Tsx (NCBI: ZP_05732324.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
  
     0.454
ytfK
YtfK; Cytoplasmic Protein; Similar to Pantoea sp. At-9b, protein of unknown function DUF1107 (NCBI: ZP_05730775.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.442
yieM
YieM; Hypothetical protein YieM; Similar to Pantoea sp. At-9b, VWA containing CoxE family protein (NCBI: ZP_05729602.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.429
ybaN
YbaN; Inner membrane protein YbaN; Similar to Pantoea sp. At-9b, protein of unknown function DUF454 (NCBI: ZP_05727518.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.429
ytfJ
YtfJ; Protein YtfJ precursor; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05730776.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.420
gsk
Gsk; Inosine-guanosine kinase; Similar to Pantoea sp. At-9b, Inosine kinase (NCBI: ZP_05727529.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.414
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.