STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arnTArnT; Undecaprenyl phosphate-alpha-4- amino-4-deoxy-L-arabinose arabinosyl transferase; Similar to Geobacter metallireducens GS-15, transmembrane protein (NCBI: YP_385331.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (578 aa)    
Predicted Functional Partners:
arnA-2
ArnA; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily.
 
  
 0.756
nudB
NudB; dATP pyrophosphohydrolase; Similar to Pantoea sp. At-9b, NUDIX hydrolase (NCBI: ZP_05728682.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.587
yfbH
YfbH; Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily.
 
  
 0.537
elaB
ElaB; Protein ElaB; Similar to Escherichia fergusonii ATCC 35469, hypothetical protein EFER_0902 (NCBI: YP_002382074.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.523
arnA
ArnA; Bifunctional polymyxin resistance ArnA protein; Similar to Pantoea sp. At-9b, formyl transferase domain protein (NCBI: ZP_05726762.1); COG: Translation, ribosomal structure and biogenesis; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
 
  
 0.482
yqjD
YqjD; Inner Membrane Protein; Similar to Pantoea sp. At-9b, protein of unknown function DUF883 ElaB (NCBI: ZP_05730739.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.476
amiC-2
AmiC; N-acetylmuramoyl-L-alanine amidase AmiC precursor; Similar to Pantoea sp. At-9b, N-acetylmuramoyl-L-alanine amidase (NCBI: ZP_05732179.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Unknown.
 
     0.475
ygaM
YgaM; Inner Membrane Protein; Similar to Pantoea sp. At-9b, protein of unknown function DUF883 ElaB (NCBI: ZP_05727850.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.422
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.