STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhsDRhsD; Protein rhsD precursor; Similar to Erwinia tasmaniensis Et1/99, Putative membrane-bound sugar-binding protein (NCBI: YP_001908915.1); COG: Cell wall/envelope/membrane biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (1397 aa)    
Predicted Functional Partners:
PANA_1077
Cytoplasmic Protein; Similar to Pectobacterium wasabiae WPP163, Domain of unknown function DUF1795 (NCBI: YP_003257806.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
 
 0.989
PANA_2349
Hypothetical Protein; Similar to Cronobacter turicensis, hypothetical protein Ctu_00930 (NCBI: YP_003208456.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
  
 
 0.960
PANA_2925
Hypothetical Protein; Similar to Serratia proteamaculans 568, hypothetical protein Spro_3016 (NCBI: YP_001479245.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
 
 0.960
dcrB
DcrB; Protein DcrB precursor; Similar to Pantoea sp. At-9b, conserved protein involved in bacteriophage adsorption (DcrB) (NCBI: ZP_05731779.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Periplasmic.
  
 
 0.960
PANA_4144
Rhs Element Vgr Protein; Similar to Klebsiella pneumoniae NTUH-K2044, hypothetical protein KP1_2400 (NCBI: YP_002919149.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
 
  
 0.897
PANA_1075
Hypothetical Protein; Similar to Dickeya dadantii Ech586, hypothetical protein Dd586_1280 (NCBI: YP_003332869.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.773
yjiW-2
YjiW; Involved in the degradation and recycling of damaged RNA. It is itself a target for degradation by the ATP-dependent protease Lon. Belongs to the SymE family.
      
 0.765
PANA_4140
Hypothetical Protein; Similar to Polaribacter sp. MED152, hypothetical protein MED152_03590 (NCBI: ZP_01052338.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
      
 0.763
PANA_4136
Hypothetical Protein; Similar to Yersinia kristensenii ATCC 33638, hypothetical protein ykris0001_25080 (NCBI: ZP_04625195.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
     
 0.753
PANA_4143
Hypothetical Protein; Similar to Yersinia pestis biovar Microtus str. 91001, hypothetical protein YP_1367 (NCBI: NP_992732.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
     
 0.699
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.