STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaNYdaN; Inner membrane protein YdaN; Similar to Pantoea sp. At-9b, Mg2 transporter protein CorA family protein (NCBI: ZP_05731634.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (340 aa)    
Predicted Functional Partners:
cre
Cre; Recombinase Cre; Similar to Pantoea sp. At-9b, integrase family protein (NCBI: ZP_05731479.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the 'phage' integrase family.
     
 0.767
pitA
PitA; Low-affinity inorganic phosphate transporter 1; Similar to Pantoea sp. At-9b, phosphate transporter (NCBI: ZP_05731633.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
   
 0.667
PANA_1235
Hypothetical Protein; RNA Polymerase Sigma Factor; Similar to Pantoea sp. At-9b, protein of unknown function DUF344 (NCBI: ZP_05731632.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
 
     0.596
bvgS
BvgS; Virulence sensor protein BvgS precursor; Similar to Pantoea sp. At-9b, Hpt sensor hybrid histidine kinase (NCBI: ZP_05731926.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 
 0.450
copA
CopA; Copper-transporting P-type ATPase; Similar to Pantoea sp. At-9b, copper-translocating P-type ATPase (NCBI: ZP_05727537.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
     
 0.405
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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