Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
ydaNYdaN; Inner membrane protein YdaN; Similar to Pantoea sp. At-9b, Mg2 transporter protein CorA family protein (NCBI: ZP_05731634.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (340 aa)    
Predicted Functional Partners:
cre
Cre; Recombinase Cre; Similar to Pantoea sp. At-9b, integrase family protein (NCBI: ZP_05731479.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the 'phage' integrase family.
     
 0.805
pitA
PitA; Low-affinity inorganic phosphate transporter 1; Similar to Pantoea sp. At-9b, phosphate transporter (NCBI: ZP_05731633.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
  
 0.659
PANA_1235
Hypothetical Protein; RNA Polymerase Sigma Factor; Similar to Pantoea sp. At-9b, protein of unknown function DUF344 (NCBI: ZP_05731632.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
 
     0.591
bvgS
BvgS; Virulence sensor protein BvgS precursor; Similar to Pantoea sp. At-9b, Hpt sensor hybrid histidine kinase (NCBI: ZP_05731926.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 
 0.444
fieF
FieF; Ferrous-iron efflux pump FieF; Similar to Citrobacter koseri ATCC BAA-895, ferrous iron efflux protein F (NCBI: YP_001454613.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
  
 0.413
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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