STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybjGYbjG; Inner Membrane-associated phospholipid phosphatase; Similar to Pantoea sp. At-9b, Undecaprenyl-diphosphatase (NCBI: ZP_05728837.1); COG: Lipid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (201 aa)    
Predicted Functional Partners:
uppP
UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
  
 
 0.922
ybjG-2
YbjG; Membrane-associated phospholipid phosphatase YbjG; Similar to Klebsiella pneumoniae 342, PAP2 family protein (NCBI: YP_002237001.1); COG: Lipid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
  
 
0.914
uppS
UppS; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di- trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.
  
 
 0.912
mraY
MraY; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
    
 0.904
ynfD
YnfD; Outer Membrane Protein YnfD; Similar to Erwinia pyrifoliae Ep1/96, hypothetical protein EpC_18440 (NCBI: YP_002648850.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.538
ecpD
EcpD; Fimbrial Chaperone protein ecpD precursor; Similar to Escherichia coli Vir68, hypothetical protein pVir_101 (NCBI: YP_003034076.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.465
mrkB
MrkB; Fimbrial Chaperone protein MrkB precursor; Similar to Escherichia coli Vir68, hypothetical protein pVir_98 (NCBI: YP_003034073.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Periplasmic.
  
     0.449
htrE
HtrE; Outer membrane usher protein HtrE precursor; Similar to Escherichia coli Vir68, hypothetical protein pVir_99 (NCBI: YP_003034074.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Outer Membrane.
  
     0.439
yeeA
YeeA; Inner membrane protein YeeA; Similar to Pantoea sp. At-9b, putative inner membrane protein YeeA (NCBI: ZP_05729009.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.439
hifB
HifB; Chaperone protein HifB precursor; Similar to Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150, fimbrial chaperone protein (NCBI: YP_151573.1); COG: Cell motility and chemotaxis; Subcellular localization as predicted by Psort 2.0: Periplasmic.
  
     0.416
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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