Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yafC-3YafC; Putative HTH-type transcriptional regulator YafC; Similar to Comamonas testosteroni KF-1, transcriptional regulator, LysR family (NCBI: ZP_03542761.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family. (287 aa)    
Predicted Functional Partners:
budR
BudR; HTH-type transcriptional regulator BudR; Similar to Pantoea sp. At-9b, transcriptional regulator, LysR family (NCBI: ZP_05728321.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.746
trpI
TrpI; HTH-type transcriptional regulator TrpI; Similar to Burkholderia sp. 383, LysR family transcriptional regulator (NCBI: YP_367156.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.727
ydcI-2
YdcI; Putative HTH-type transcriptional regulator YdcI; Similar to Escherichia fergusonii ATCC 35469, putative DNA-binding transcriptional regulator (NCBI: YP_002382646.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.715
hdfR
HdfR; Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon.
  
     0.704
cynR
CynR; HTH-type transcriptional regulator CynR; Similar to Serratia odorifera 4Rx13, transcriptional regulatory protein (NCBI: ZP_06193704.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
    0.697
yybE
YybE; Putative HTH-type transcriptional regulator YybE; Similar to Klebsiella pneumoniae 342, transcriptional regulator, LysR family (NCBI: YP_002240461.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.688
ntcB
NtcB; Probable nitrogen assimilation transcriptional activator; Similar to Pantoea sp. At-9b, transcriptional regulator, LysR family (NCBI: ZP_05727534.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.648
ydcI
YdcI; Putative HTH-type transcriptional regulator YdcI; Similar to Pantoea sp. At-9b, major facilitator superfamily MFS_1 (NCBI: ZP_05729544.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.641
nac
Nac; Nitrogen assimilation regulatory protein Nac; Similar to Pantoea sp. At-9b, transcriptional regulator, LysR family (NCBI: ZP_05728948.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
  
     0.620
lysR
LysR; Transcriptional activator protein LysR; Similar to Pantoea sp. At-9b, transcriptional regulator, LysR family (NCBI: ZP_05731433.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.604
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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