Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
hipAHipA; Protein HipA; Similar to >pdb|3FBR|A Chain A, Structure Of Hipa-Amppnp-Pepti; COG: Cell division and chromosome partitioning; Subcellular localization as predicted by Psort 2.0: Unknown. (369 aa)    
Predicted Functional Partners:
hipB
HipB; HTH-type transcriptional regulator HipB; Similar to Pantoea sp. At-9b, transcriptional regulator, XRE family (NCBI: ZP_05729274.1); COG: Cell division and chromosome partitioning; Subcellular localization as predicted by Psort 2.0: Unknown.
 
 
 
 0.997
parE
ParE; Topoisomerase IV subunit B; Similar to Pantoea sp. At-9b, DNA topoisomerase IV, B subunit (NCBI: ZP_05730443.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
      
 0.814
ycjC
YcjC; Transcriptional Regulator; Similar to Yersinia enterocolitica subsp. enterocolitica 8081, putative DNA-binding protein (NCBI: YP_001005432.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
   
 
 0.612
bls-2
Bls; Blasticidin S-acetyltransferase; Similar to Klebsiella pneumoniae 342, acetyltransferase, GNAT family (NCBI: YP_002235943.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
       0.542
PANA_3040
Hypothetical Protein; Similar to Pantoea sp. At-9b, transcriptional regulator, XRE family (NCBI: ZP_05727160.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Unknown.
   
 
 0.525
gltX
GltX; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
      
 0.494
iciA
IciA; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family.
      
 0.443
PANA_2820
Protein HI0131 precursor; Similar to Pantoea sp. At-9b, extracellular solute-binding protein family 1 (NCBI: ZP_05727717.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
  
     0.401
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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