STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ynfDYnfD; Outer Membrane Protein YnfD; Similar to Erwinia pyrifoliae Ep1/96, hypothetical protein EpC_18440 (NCBI: YP_002648850.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown. (98 aa)    
Predicted Functional Partners:
ynfB
YnfB; Secreted Protein YnfB; Similar to Pantoea sp. At-9b, protein of unknown function DUF1283 (NCBI: ZP_05729503.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown; Belongs to the UPF0482 family.
 
     0.902
yidQ
YidQ; Lipoprotein; Similar to Pantoea sp. At-9b, protein of unknown function DUF1375 (NCBI: ZP_05729645.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.766
secM
SecM; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.756
yqjE
YqjE; Inner membrane protein YqjE; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05730740.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.755
yggN
YggN; Periplasmic Protein; Similar to Enterobacter helveticus, Uncharacterized protein yggN (NCBI: CAZ90543.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Extracellular.
  
     0.749
yfeY
YfeY; Lipoprotein; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05727674.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.733
yacC
YacC; Periplasmic Protein YacC; Similar to Pantoea sp. At-9b, conserved hypothetical protein (NCBI: ZP_05729836.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.728
ycdY
YcdY; Dimethyl Sulfoxide Reductase Component Protein YcdY; Similar to Pantoea sp. At-9b, cytoplasmic chaperone TorD family protein (NCBI: ZP_05728462.1); COG: Coenzyme transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
     0.710
yhhL
YhhL; Inner Membrane Protein YhhL; Similar to Klebsiella pneumoniae subsp. pneumoniae MGH 78578, hypothetical protein KPN_03832 (NCBI: YP_001337486.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
     0.706
yjeI
YjeI; Lipoprotein; Similar to Pantoea sp. At-9b, putative lipoprotein (NCBI: ZP_05730842.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown.
  
     0.701
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.