Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
opuCCOpuCC; Glycine betaine/carnitine/choline-binding protein precursor; Similar to Pantoea sp. At-9b, Substrate-binding region of ABC-type glycine betaine transport system (NCBI: ZP_05729508.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (303 aa)    
Predicted Functional Partners:
yehW-2
YehW; Inner membrane ABC transporter permease protein YehW; Similar to Pantoea sp. At-9b, binding-protein-dependent transport systems inner membrane component (NCBI: ZP_05729507.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.999
opuCB
OpuCB; Glycine betaine/carnitine/choline transport system permease protein OpuCB; Similar to Pantoea sp. At-9b, binding-protein-dependent transport systems inner membrane component (NCBI: ZP_05729509.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.999
yehY
YehY; Inner membrane ABC transporter permease protein YehY; Similar to Pantoea sp. At-9b, binding-protein-dependent transport systems inner membrane component (NCBI: ZP_05732427.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.998
yehW
YehW; Inner membrane ABC transporter permease protein YehW; Similar to Citrobacter koseri ATCC BAA-895, hypothetical protein CKO_00666 (NCBI: YP_001452256.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.997
opuBA
OpuBA; Choline transport ATP-binding protein OpuBA; Similar to Pantoea sp. At-9b, glycine betaine/L-proline ABC transporter, ATPase subunit (NCBI: ZP_05729510.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.996
yehX
YehX; ABC Transporter; Similar to Pantoea sp. At-9b, ABC transporter related protein (NCBI: ZP_05732428.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.985
yehZ
YehZ; Transport System Permease Protein; Similar to Pantoea sp. At-9b, Substrate-binding region of ABC-type glycine betaine transport system (NCBI: ZP_05732426.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
  
  
 
0.922
proW-2
ProW; Glycine betaine/L-proline transport system permease protein proW; Similar to Erwinia pyrifoliae Ep1/96, Glycine betaine/L-proline transport system permease protein (NCBI: YP_002647942.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 
 0.918
proX
ProX; Glycine betaine-binding periplasmic protein precursor; Similar to Pantoea sp. At-9b, Substrate-binding region of ABC-type glycine betaine transport system (NCBI: ZP_05727857.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
   
 
 0.429
phnD
PhnD; Phosphonates-binding periplasmic protein precursor; Similar to Pantoea sp. At-9b, phosphonate ABC transporter, periplasmic phosphonate binding protein (NCBI: ZP_05732633.1); COG: Inorganic ion transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
    
 0.400
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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