STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCBOpuCB; Glycine betaine/carnitine/choline transport system permease protein OpuCB; Similar to Pantoea sp. At-9b, binding-protein-dependent transport systems inner membrane component (NCBI: ZP_05729509.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane. (215 aa)    
Predicted Functional Partners:
opuCC
OpuCC; Glycine betaine/carnitine/choline-binding protein precursor; Similar to Pantoea sp. At-9b, Substrate-binding region of ABC-type glycine betaine transport system (NCBI: ZP_05729508.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.999
yehZ
YehZ; Transport System Permease Protein; Similar to Pantoea sp. At-9b, Substrate-binding region of ABC-type glycine betaine transport system (NCBI: ZP_05732426.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
 0.997
opuBA
OpuBA; Choline transport ATP-binding protein OpuBA; Similar to Pantoea sp. At-9b, glycine betaine/L-proline ABC transporter, ATPase subunit (NCBI: ZP_05729510.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 0.995
yehX
YehX; ABC Transporter; Similar to Pantoea sp. At-9b, ABC transporter related protein (NCBI: ZP_05732428.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 0.981
yehW-2
YehW; Inner membrane ABC transporter permease protein YehW; Similar to Pantoea sp. At-9b, binding-protein-dependent transport systems inner membrane component (NCBI: ZP_05729507.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
   
0.898
proV
ProV; Glycine betaine/L-proline transport ATP-binding protein ProV; Similar to Pantoea sp. At-9b, glycine betaine/L-proline ABC transporter, ATPase subunit (NCBI: ZP_05727855.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
 
   
 0.442
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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