STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PANA_1978Hypothetical Protein; Similar to Pantoea sp. At-9b, hypothetical protein Pat9bDRAFT_2832 (NCBI: ZP_05729516.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Unknown. (97 aa)    
Predicted Functional Partners:
cybB
CybB; Cytochrome b561; Similar to Pectobacterium carotovorum subsp. carotovorum WPP14, cytochrome B561 (NCBI: ZP_03830356.1); COG: Energy production and conversion; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.589
ynfM
YnfM; Inner membrane transport protein YnfM; Similar to Pantoea sp. At-9b, major facilitator superfamily MFS_1 (NCBI: ZP_05729515.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.493
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.