STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybiIYbiI; Hypothetical protein YbiI; Similar to Serratia proteamaculans 568, hypothetical protein Spro_1480 (NCBI: YP_001477712.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Unknown. (121 aa)    
Predicted Functional Partners:
dppA-2
DppA; Periplasmic dipeptide transport protein precursor; Similar to Pantoea sp. At-9b, extracellular solute-binding protein family 5 (NCBI: ZP_05729535.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Periplasmic.
       0.773
pepT-2
PepT; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
       0.535
rpoB
RpoB; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.502
rpoC
RpoC; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.494
yjiA
YjiA; Cobalamin Synthesis Protein/P47K Family Protein; Similar to Pantoea sp. At-9b, cobalamin synthesis protein P47K (NCBI: ZP_05729919.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Unknown.
  
  
 0.407
yeiR
YeiR; Cobalamin Synthesis Protein/P47K Family Protein; Similar to Pantoea sp. At-9b, cobalamin synthesis protein P47K (NCBI: ZP_05730911.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
  
  
 0.407
yeiR-2
YeiR; 47 kDa protein YeiR; Similar to Pantoea sp. At-9b, cobalamin synthesis protein P47K (NCBI: ZP_05726963.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
  
  
 0.407
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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