STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pnbAPnbA; Para-nitrobenzyl esterase; Similar to Pantoea sp. At-9b, methyl-accepting chemotaxis sensory transducer (NCBI: ZP_05729540.1); COG: Lipid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane; Belongs to the type-B carboxylesterase/lipase family. (506 aa)    
Predicted Functional Partners:
yjfP
YjfP; Esterase yjfP; Similar to Pantoea sp. At-9b, phospholipase/Carboxylesterase (NCBI: ZP_05730786.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
     
 0.788
rpsD
RpsD; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.771
iap
Iap; Alkaline phosphatase isozyme conversion protein precursor; Similar to Pantoea sp. At-9b, peptidase M28 (NCBI: ZP_05731694.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
  
 0.756
rpsK
RpsK; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.751
manZ
ManZ; Mannose permease IID component; Similar to Pantoea sp. At-9b, PTS system, mannose/fructose/sorbose family, IID subunit (NCBI: ZP_05728607.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
      
 0.693
gmk
Gmk; Essential for recycling GMP and indirectly, cGMP.
  
 
 0.669
hrpB
HrpB; ATP-dependent RNA helicase HrpB; Similar to Pantoea sp. At-9b, ATP-dependent helicase HrpB (NCBI: ZP_05731542.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Unknown.
    
 0.530
hrpA
HrpA; ATP-dependent RNA helicase HrpA; Similar to Pantoea sp. At-9b, ATP-dependent helicase HrpA (NCBI: ZP_05729559.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Unknown.
    
 0.530
rnd
Rnd; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.
    
  0.502
tar-9
Tar; Methyl-accepting chemotaxis protein II; Similar to Pantoea sp. At-9b, peptidase T (NCBI: ZP_05729536.1); COG: Posttranslational modification, protein turnover, chaperones; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.496
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.