Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pnbAPnbA; Para-nitrobenzyl esterase; Similar to Pantoea sp. At-9b, methyl-accepting chemotaxis sensory transducer (NCBI: ZP_05729540.1); COG: Lipid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane; Belongs to the type-B carboxylesterase/lipase family. (506 aa)    
Predicted Functional Partners:
yjfP
YjfP; Esterase yjfP; Similar to Pantoea sp. At-9b, phospholipase/Carboxylesterase (NCBI: ZP_05730786.1); COG: General function prediction only; Subcellular localization as predicted by Psort 2.0: Unknown.
     
 0.803
gmk
Gmk; Essential for recycling GMP and indirectly, cGMP.
  
 
  0.711
manZ
ManZ; Mannose permease IID component; Similar to Pantoea sp. At-9b, PTS system, mannose/fructose/sorbose family, IID subunit (NCBI: ZP_05728607.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
      
 0.678
manX
ManX; PTS system mannose-specific EIIAB component; Similar to Pantoea sp. At-9b, PTS system, mannose/fructose/sorbose family, IIB subunit (NCBI: ZP_05728605.1); COG: Carbohydrate transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
      
 0.533
sbcD
SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
   0.511
PANA_1987
Hypothetical Protein; Similar to Pantoea sp. At-9b, Carboxylesterase type B (NCBI: ZP_05729541.1); COG: Unknown Function; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.490
rpsA
RpsA; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
 
  0.486
tar-9
Tar; Methyl-accepting chemotaxis protein II; Similar to Pantoea sp. At-9b, peptidase T (NCBI: ZP_05729536.1); COG: Posttranslational modification, protein turnover, chaperones; Subcellular localization as predicted by Psort 2.0: Inner Membrane.
       0.482
sbcC
SbcC; Exonuclease SbcC; Similar to Pantoea sp. At-9b, exonuclease SbcC (NCBI: ZP_05727438.1); COG: DNA replication, recombination and repair; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
    
   0.480
fnr
Fnr; Fumarate nitrate reduction regulatory protein; Similar to Pantoea sp. At-9b, Smr protein/MutS2 (NCBI: ZP_05729546.1); COG: Signal transduction mechanisms; Subcellular localization as predicted by Psort 2.0: Cytoplasmic.
   
 
 0.452
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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