Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ydcIYdcI; Putative HTH-type transcriptional regulator YdcI; Similar to Pantoea sp. At-9b, major facilitator superfamily MFS_1 (NCBI: ZP_05729544.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family. (306 aa)    
Predicted Functional Partners:
cynR
CynR; HTH-type transcriptional regulator CynR; Similar to Serratia odorifera 4Rx13, transcriptional regulatory protein (NCBI: ZP_06193704.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.713
aaeR
AaeR; HTH-type transcriptional activator AaeR; Similar to Pantoea sp. At-9b, transcriptional regulator, LysR family (NCBI: ZP_05732140.1); COG: Cell wall/membrane/envelope biogenesis; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.703
ywbI
YwbI; Putative HTH-type transcriptional regulator YwbI; Similar to Pantoea sp. At-9b, transcriptional regulator, LysR family (NCBI: ZP_05731753.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.700
ltrA
LtrA; Probable HTH-type transcriptional regulator LtrA; Similar to Pseudomonas syringae pv. phaseolicola 1448A, LysR family transcriptional regulator (NCBI: YP_276123.1); COG: Amino acid transport and metabolism; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.693
yhjC
YhjC; Putative HTH-type transcriptional regulator HI1364; Similar to Klebsiella pneumoniae 342, transcriptional regulator, LysR family (NCBI: YP_002239081.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.683
ptxR-2
PtxR; HTH-type transcriptional regulator PtxR; Similar to Erwinia pyrifoliae Ep1/96, LysR-family transcriptional activator (NCBI: YP_002647705.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.667
yhcS
YhcS; Putative HTH-type transcriptional regulator HI1364; Similar to Pantoea sp. At-9b, transcriptional regulator, LysR family (NCBI: ZP_05729265.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.645
ycaN-2
YcaN; Putative HTH-type transcriptional regulator YcaN; Similar to Serratia proteamaculans 568, LysR family transcriptional regulator (NCBI: YP_001479406.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.643
yafC-3
YafC; Putative HTH-type transcriptional regulator YafC; Similar to Comamonas testosteroni KF-1, transcriptional regulator, LysR family (NCBI: ZP_03542761.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.641
yhjC-2
YhjC; Putative HTH-type transcriptional regulator YhjC; Similar to Pantoea sp. At-9b, transcriptional regulator, LysR family (NCBI: ZP_05732583.1); COG: Transcription; Subcellular localization as predicted by Psort 2.0: Cytoplasmic; Belongs to the LysR transcriptional regulatory family.
  
     0.634
Your Current Organism:
Pantoea ananatis
NCBI taxonomy Id: 706191
Other names: P. ananatis LMG 20103, Pantoea ananatis LMG 20103, Pantoea ananatis str. LMG 20103, Pantoea ananatis strain LMG 20103
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